{"id":2820,"date":"2023-06-12T23:42:36","date_gmt":"2023-06-12T22:42:36","guid":{"rendered":"https:\/\/archive.belbi.bg.ac.rs\/2023\/?post_type=abstract&#038;p=2820"},"modified":"2023-06-14T18:37:24","modified_gmt":"2023-06-14T17:37:24","slug":"bioinformatics-and-evolution-of-non-model-organisms","status":"publish","type":"abstract","link":"https:\/\/archive.belbi.bg.ac.rs\/2023\/abstract\/bioinformatics-and-evolution-of-non-model-organisms\/","title":{"rendered":"Bioinformatics and evolution of non-model organisms"},"content":{"rendered":"\n<p>Mikhail S. Gelfand<sup>1,2<\/sup><\/p>\n\n\n\n<p class=\"affiliation-para\"><sup>1<\/sup>Skolkovo Institute of Science and Technology, Moscow, Russia <\/p>\n\n\n\n<p class=\"affiliation-para\"><sup>2<\/sup>A.A.Kharkevich Institute for Information Transmission Problems, Moscow, Russia<\/p>\n\n\n\n<p>mikhail.gelfand [at] gmail.com<\/p>\n\n\n\n<p><strong>Abstract<\/strong><\/p>\n\n\n\n<p class=\"abstract-para\">The textbooks are written based on <em>Escherichia coli<\/em>, <em>Arabidopsis thaliana<\/em>, <em>Saccraromyces\u00a0cerevisiae<\/em>, <em>Drosophila melanogaster<\/em>, and mouse biology, with some contribution of less popular model species. However, interesting biology and evolution also happens elsewhere, and I&#8217;ll tell three such stories that have an evolutionary aspect in common: positive selection on mRNA editing in octopuses and their relatives, tetraplet codons in some ciliate infusoria\u00a0and their seemingly neutral evolution, and (time permitting) recapitulation of the embryonic transcriptional program in insect pupae.<\/p>\n\n\n\n<p class=\"abstract-para\"><strong>Keywords:<\/strong> comparative genomics, molecular evolution, coleoids, mRNA editing, Euplotes, frameshfting, genetic code, holometabolous insects, transcriptome, pupal development<\/p>\n\n\n\n<p class=\"abstract-para\"><strong>Acknowledgement:<\/strong> This is joint work with Mikhail Moldovan, Sofya Gaydukova, Aleksandra Ozerova, Pavel Baranov partially supported by the RSF under grant 23-14-00136 and the RFBR under grant 20-54-14005.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Mikhail S. Gelfand<sup>1,2<\/sup><\/p>\n<p class=\"affiliation-para\"><sup>1<\/sup>Skolkovo Institute of Science and Technology, Moscow, Russia <\/p>\n<p class=\"affiliation-para\"><sup>2<\/sup>A.A.Kharkevich Institute for Information Transmission Problems, Moscow, Russia<\/p>\n<p> <a class=\"continue-reading-link\" href=\"https:\/\/archive.belbi.bg.ac.rs\/2023\/abstract\/bioinformatics-and-evolution-of-non-model-organisms\/\"><span>Continue reading<\/span><i class=\"crycon-right-dir\"><\/i><\/a> <\/p>\n","protected":false},"author":162,"featured_media":0,"template":"","categories":[17],"tags":[],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v23.0 - https:\/\/yoast.com\/wordpress\/plugins\/seo\/ -->\n<title>Bioinformatics and evolution of non-model organisms - BelBi 2023<\/title>\n<meta name=\"robots\" content=\"noindex, follow\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Bioinformatics and evolution of non-model organisms - BelBi 2023\" \/>\n<meta property=\"og:description\" content=\"Mikhail S. Gelfand1,21Skolkovo Institute of Science and Technology, Moscow, Russia 2A.A.Kharkevich Institute for Information Transmission Problems, Moscow, Russia Continue reading\" \/>\n<meta property=\"og:url\" content=\"https:\/\/archive.belbi.bg.ac.rs\/2023\/abstract\/bioinformatics-and-evolution-of-non-model-organisms\/\" \/>\n<meta property=\"og:site_name\" content=\"BelBi 2023\" \/>\n<meta property=\"article:modified_time\" content=\"2023-06-14T17:37:24+00:00\" \/>\n<meta name=\"twitter:card\" content=\"summary_large_image\" \/>\n<meta name=\"twitter:label1\" content=\"Est. reading time\" \/>\n\t<meta name=\"twitter:data1\" content=\"1 minute\" \/>\n<script type=\"application\/ld+json\" class=\"yoast-schema-graph\">{\"@context\":\"https:\/\/schema.org\",\"@graph\":[{\"@type\":\"WebPage\",\"@id\":\"https:\/\/archive.belbi.bg.ac.rs\/2023\/abstract\/bioinformatics-and-evolution-of-non-model-organisms\/\",\"url\":\"https:\/\/archive.belbi.bg.ac.rs\/2023\/abstract\/bioinformatics-and-evolution-of-non-model-organisms\/\",\"name\":\"Bioinformatics and evolution of non-model organisms - BelBi 2023\",\"isPartOf\":{\"@id\":\"https:\/\/archive.belbi.bg.ac.rs\/2023\/#website\"},\"datePublished\":\"2023-06-12T22:42:36+00:00\",\"dateModified\":\"2023-06-14T17:37:24+00:00\",\"breadcrumb\":{\"@id\":\"https:\/\/archive.belbi.bg.ac.rs\/2023\/abstract\/bioinformatics-and-evolution-of-non-model-organisms\/#breadcrumb\"},\"inLanguage\":\"en-US\",\"potentialAction\":[{\"@type\":\"ReadAction\",\"target\":[\"https:\/\/archive.belbi.bg.ac.rs\/2023\/abstract\/bioinformatics-and-evolution-of-non-model-organisms\/\"]}]},{\"@type\":\"BreadcrumbList\",\"@id\":\"https:\/\/archive.belbi.bg.ac.rs\/2023\/abstract\/bioinformatics-and-evolution-of-non-model-organisms\/#breadcrumb\",\"itemListElement\":[{\"@type\":\"ListItem\",\"position\":1,\"name\":\"Home\",\"item\":\"https:\/\/archive.belbi.bg.ac.rs\/2023\/\"},{\"@type\":\"ListItem\",\"position\":2,\"name\":\"Bioinformatics and evolution of non-model organisms\"}]},{\"@type\":\"WebSite\",\"@id\":\"https:\/\/archive.belbi.bg.ac.rs\/2023\/#website\",\"url\":\"https:\/\/archive.belbi.bg.ac.rs\/2023\/\",\"name\":\"BelBi 2023\",\"description\":\"\",\"publisher\":{\"@id\":\"https:\/\/archive.belbi.bg.ac.rs\/2023\/#organization\"},\"potentialAction\":[{\"@type\":\"SearchAction\",\"target\":{\"@type\":\"EntryPoint\",\"urlTemplate\":\"https:\/\/archive.belbi.bg.ac.rs\/2023\/?s={search_term_string}\"},\"query-input\":\"required name=search_term_string\"}],\"inLanguage\":\"en-US\"},{\"@type\":\"Organization\",\"@id\":\"https:\/\/archive.belbi.bg.ac.rs\/2023\/#organization\",\"name\":\"Belgrade Bioinformatics Conference\",\"url\":\"https:\/\/archive.belbi.bg.ac.rs\/2023\/\",\"logo\":{\"@type\":\"ImageObject\",\"inLanguage\":\"en-US\",\"@id\":\"https:\/\/archive.belbi.bg.ac.rs\/2023\/#\/schema\/logo\/image\/\",\"url\":\"https:\/\/archive.belbi.bg.ac.rs\/2023\/wp-content\/uploads\/2023\/02\/145_97_171.png\",\"contentUrl\":\"https:\/\/archive.belbi.bg.ac.rs\/2023\/wp-content\/uploads\/2023\/02\/145_97_171.png\",\"width\":278,\"height\":500,\"caption\":\"Belgrade Bioinformatics Conference\"},\"image\":{\"@id\":\"https:\/\/archive.belbi.bg.ac.rs\/2023\/#\/schema\/logo\/image\/\"}}]}<\/script>\n<!-- \/ Yoast SEO plugin. -->","yoast_head_json":{"title":"Bioinformatics and evolution of non-model organisms - BelBi 2023","robots":{"index":"noindex","follow":"follow"},"og_locale":"en_US","og_type":"article","og_title":"Bioinformatics and evolution of non-model organisms - BelBi 2023","og_description":"Mikhail S. Gelfand1,21Skolkovo Institute of Science and Technology, Moscow, Russia 2A.A.Kharkevich Institute for Information Transmission Problems, Moscow, Russia Continue reading","og_url":"https:\/\/archive.belbi.bg.ac.rs\/2023\/abstract\/bioinformatics-and-evolution-of-non-model-organisms\/","og_site_name":"BelBi 2023","article_modified_time":"2023-06-14T17:37:24+00:00","twitter_card":"summary_large_image","twitter_misc":{"Est. reading time":"1 minute"},"schema":{"@context":"https:\/\/schema.org","@graph":[{"@type":"WebPage","@id":"https:\/\/archive.belbi.bg.ac.rs\/2023\/abstract\/bioinformatics-and-evolution-of-non-model-organisms\/","url":"https:\/\/archive.belbi.bg.ac.rs\/2023\/abstract\/bioinformatics-and-evolution-of-non-model-organisms\/","name":"Bioinformatics and evolution of non-model organisms - BelBi 2023","isPartOf":{"@id":"https:\/\/archive.belbi.bg.ac.rs\/2023\/#website"},"datePublished":"2023-06-12T22:42:36+00:00","dateModified":"2023-06-14T17:37:24+00:00","breadcrumb":{"@id":"https:\/\/archive.belbi.bg.ac.rs\/2023\/abstract\/bioinformatics-and-evolution-of-non-model-organisms\/#breadcrumb"},"inLanguage":"en-US","potentialAction":[{"@type":"ReadAction","target":["https:\/\/archive.belbi.bg.ac.rs\/2023\/abstract\/bioinformatics-and-evolution-of-non-model-organisms\/"]}]},{"@type":"BreadcrumbList","@id":"https:\/\/archive.belbi.bg.ac.rs\/2023\/abstract\/bioinformatics-and-evolution-of-non-model-organisms\/#breadcrumb","itemListElement":[{"@type":"ListItem","position":1,"name":"Home","item":"https:\/\/archive.belbi.bg.ac.rs\/2023\/"},{"@type":"ListItem","position":2,"name":"Bioinformatics and evolution of non-model organisms"}]},{"@type":"WebSite","@id":"https:\/\/archive.belbi.bg.ac.rs\/2023\/#website","url":"https:\/\/archive.belbi.bg.ac.rs\/2023\/","name":"BelBi 2023","description":"","publisher":{"@id":"https:\/\/archive.belbi.bg.ac.rs\/2023\/#organization"},"potentialAction":[{"@type":"SearchAction","target":{"@type":"EntryPoint","urlTemplate":"https:\/\/archive.belbi.bg.ac.rs\/2023\/?s={search_term_string}"},"query-input":"required name=search_term_string"}],"inLanguage":"en-US"},{"@type":"Organization","@id":"https:\/\/archive.belbi.bg.ac.rs\/2023\/#organization","name":"Belgrade Bioinformatics Conference","url":"https:\/\/archive.belbi.bg.ac.rs\/2023\/","logo":{"@type":"ImageObject","inLanguage":"en-US","@id":"https:\/\/archive.belbi.bg.ac.rs\/2023\/#\/schema\/logo\/image\/","url":"https:\/\/archive.belbi.bg.ac.rs\/2023\/wp-content\/uploads\/2023\/02\/145_97_171.png","contentUrl":"https:\/\/archive.belbi.bg.ac.rs\/2023\/wp-content\/uploads\/2023\/02\/145_97_171.png","width":278,"height":500,"caption":"Belgrade Bioinformatics Conference"},"image":{"@id":"https:\/\/archive.belbi.bg.ac.rs\/2023\/#\/schema\/logo\/image\/"}}]}},"_links":{"self":[{"href":"https:\/\/archive.belbi.bg.ac.rs\/2023\/wp-json\/wp\/v2\/abstract\/2820"}],"collection":[{"href":"https:\/\/archive.belbi.bg.ac.rs\/2023\/wp-json\/wp\/v2\/abstract"}],"about":[{"href":"https:\/\/archive.belbi.bg.ac.rs\/2023\/wp-json\/wp\/v2\/types\/abstract"}],"author":[{"embeddable":true,"href":"https:\/\/archive.belbi.bg.ac.rs\/2023\/wp-json\/wp\/v2\/users\/162"}],"wp:attachment":[{"href":"https:\/\/archive.belbi.bg.ac.rs\/2023\/wp-json\/wp\/v2\/media?parent=2820"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/archive.belbi.bg.ac.rs\/2023\/wp-json\/wp\/v2\/categories?post=2820"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/archive.belbi.bg.ac.rs\/2023\/wp-json\/wp\/v2\/tags?post=2820"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}